Title: Aligning 2D and 3D Multimodality Breast Images Purpose: The purpose of this work is to describe a framework in which breast images from MRI, PET, Ultrasound, and Digital Mammography can be registered (aligned). Materials and Methods: Prior to image acquisition, an alignment grid is drawn on the breast skin using a marking pen. In general, prior to image acquisition, modality specific markers (vitamin E for MRI, FDG for PET, and standard lead markers for Digital Mammography) are placed at the indicated grid points. Images are then acquired with the external markers appearing on the images. In the case of PET, diagnostic images are first acquired in the absence of markers, then the cameras are turned off, next the markers are put in place, and finally the cameras are turned back on. Ultrasound does not use any markers but uses a position tracking device which is attached to the probe and is calibrated to the grid. Results: Given the similarity between pre- and post-contrast breast MRI, it is not surprising that their alignment is most accurate. Although 2D, by tracking the position of the Ultrasound probe with respect to the external markers during image acquisition, Ultrasound images may be aligned as well. Using the external marker system, PET images may be aligned as well but the lack of internal anatomical information inherent in PET images reduces the accuracy of the subsequent registration. Differences in patient positioning during image acquisition (supine for PET and prone for MRI) pose problems as well. In the future we will use a dedicated breast PET scanner which will dramatically increase the accuracy of PET-MRI registration (because patient positioning will be similar to that of MRI). Digital Mammography to MRI poses the greatest challenge because: 1) Digital Mammography is a 2D projection image of the 3D breast, and 2) the breast is subjected to compression during the imaging procedure. Conclusion: With varying degrees of accuracy, one may register images from a variety of modalities using an external marker system.